Planteome Annotation Wiki: A semantic application for the community curation of Plant genotypes and phenotypes
|Planteome Annotation Wiki: A semantic application for the community curation of Plant genotypes and phenotypes|
|Author(s)||Preece J., Elser J., Jaiswal P.|
|Published in||ACM International Conference Proceeding Series|
|Keyword(s)||Theory (Extra: Curation, Data integration, File formats, Gene ontology, Higher order, MediaWiki, Plant genotype, Research platforms, Scientific researches, Search capabilities, Semantic browsing, Semantic technologies, Technology platforms, Theory, Data structures, Plants (botany), User interfaces, Web services, Websites, Semantic Web)|
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Planteome Annotation Wiki: A semantic application for the community curation of Plant genotypes and phenotypes is a 2012 conference paper written in English by Preece J., Elser J., Jaiswal P. and published in ACM International Conference Proceeding Series.
Two notable trends currently impacting biology curation are 1) the use of wikis to input, store, and disseminate re-search data and 2) the development of semantic technologies to facilitate higher-order data description and exploration. These separate developments, when brought together, have the potential to deliver on one promise of the\semantic web": structured, self-described data used to further scientific research and analysis. The Semantic MediaWiki  extension, when used in conjunction with Semantic Forms , pro-vides an avenue to create a semantically-driven, community-powered research platform on the web. The Planteome Annotation Wiki implements these technology platforms to provide a user interface for annotation, personal user accounts, a set of previously-curated annotations (i.e. from TAIR , Gramene , and the Plant Ontology Consortium ) and a rigorous semantic data structure. The wiki also dynamically integrates data from other sites via web services. For example, Gene Ontology  and Plant Ontology terms, PubMed references and taxonomic data are all available. An import utility accepting large-scale GO Annotation File Format (GAF ) data has also been developed, and the wiki provides multi-format import, export, and semantic browsing and search capabilities. Future enhancements include an exploration of semantic inferencing capabilities using ontologies, a curatorial approval mechanism, and further data integration with other biowikis. Copyright
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